STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IF1G_08870Vacuolar protein sorting-associated protein 45. (1229 aa)    
Predicted Functional Partners:
IF1G_02109
Pumilio domain-containing protein.
    
   0.916
IF1G_01979
COPII-coated vesicle membrane protein Erv46.
 
      0.898
IF1G_03238
Vacuolar segregation protein (Pep7).
     
  0.871
IF1G_03343
Pumilio-family RNA binding repeat protein.
    
   0.776
IF1G_02840
Spindle pole body component.
    
 
 0.695
IF1G_01515
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
 
 0.678
IF1G_04850
Adenine phosphoribosyltransferase.
      0.652
IF1G_07708
Formyl transferase.
  
  
 0.634
IF1G_08878
Xaa-pro aminopeptidase; Belongs to the peptidase M24B family.
    
 
 0.554
IF1G_06496
tRNA pseudouridine synthase.
      
 0.533
Your Current Organism:
Cordyceps javanica
NCBI taxonomy Id: 43265
Other names: C. javanica, CBS 134.22, Cordyceps javanica (Frieder. & Bally) Kepler, B. Shrestha & Spatafora, 2017, Isaria javanica, Isaria javanicus, Paecilomyces javanica, Paecilomyces sp. ARSEF 3776, Paecilomyces sp. ARSEF 3778, Spicaria javanica
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