STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IF1G_08590Histone deacetylase HosB. (1176 aa)    
Predicted Functional Partners:
IF1G_02315
Signal transduction response regulator, SKN7-like protein.
    
 0.984
IF1G_04593
Nucleoporin Nsp1.
    
 0.984
IF1G_08153
Chromatin assembly factor 1 subunit C.
   
 0.937
IF1G_02954
Mitochondrial ATPase (Afg1).
      0.887
IF1G_00487
Deacetylase complex subunit Sds3.
    
 0.872
IF1G_04897
Histone deacetylase RPD3.
    
0.870
IF1G_06044
Histone acetylase complex subunit.
    
 0.869
IF1G_05835
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.868
IF1G_02404
Histone H2B; Belongs to the histone H2B family.
    
 0.857
IF1G_04425
Pre-mRNA splicing factor.
    
 0.835
Your Current Organism:
Cordyceps javanica
NCBI taxonomy Id: 43265
Other names: C. javanica, CBS 134.22, Cordyceps javanica (Frieder. & Bally) Kepler, B. Shrestha & Spatafora, 2017, Isaria javanica, Isaria javanicus, Paecilomyces javanica, Paecilomyces sp. ARSEF 3776, Paecilomyces sp. ARSEF 3778, Spicaria javanica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.