Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| IF1G_00830 | IF1G_02121 | A0A545VGN3 | A0A545VDV3 | DNA mismatch repair protein Msh4. | DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. | 0.836 |
| IF1G_00830 | IF1G_04015 | A0A545VGN3 | A0A545W244 | DNA mismatch repair protein Msh4. | EXO1 protein. | 0.839 |
| IF1G_00830 | IF1G_04034 | A0A545VGN3 | A0A545V507 | DNA mismatch repair protein Msh4. | Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. | 0.878 |
| IF1G_00830 | IF1G_04712 | A0A545VGN3 | A0A545V333 | DNA mismatch repair protein Msh4. | DNA mismatch repair protein Mlh1. | 0.944 |
| IF1G_00830 | IF1G_04767 | A0A545VGN3 | A0A545V396 | DNA mismatch repair protein Msh4. | Acetamidase/formamidase. | 0.881 |
| IF1G_00830 | IF1G_05209 | A0A545VGN3 | A0A545W1P0 | DNA mismatch repair protein Msh4. | DNA mismatch repair protein (Pms1). | 0.934 |
| IF1G_00830 | IF1G_05596 | A0A545VGN3 | A0A545VZ86 | DNA mismatch repair protein Msh4. | DNA mismatch repair protein. | 0.953 |
| IF1G_00830 | IF1G_05852 | A0A545VGN3 | A0A545V2U5 | DNA mismatch repair protein Msh4. | MutS domain V. | 0.997 |
| IF1G_00830 | IF1G_06086 | A0A545VGN3 | A0A545VVI6 | DNA mismatch repair protein Msh4. | AAA-ATPase vps4-associated protein 1 domain-containing protein. | 0.917 |
| IF1G_00830 | IF1G_10969 | A0A545VGN3 | A0A545VJI6 | DNA mismatch repair protein Msh4. | Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. | 0.778 |
| IF1G_02121 | IF1G_00830 | A0A545VDV3 | A0A545VGN3 | DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. | DNA mismatch repair protein Msh4. | 0.836 |
| IF1G_02121 | IF1G_04015 | A0A545VDV3 | A0A545W244 | DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. | EXO1 protein. | 0.842 |
| IF1G_02121 | IF1G_04034 | A0A545VDV3 | A0A545V507 | DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. | Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. | 0.788 |
| IF1G_02121 | IF1G_04712 | A0A545VDV3 | A0A545V333 | DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. | DNA mismatch repair protein Mlh1. | 0.622 |
| IF1G_02121 | IF1G_05852 | A0A545VDV3 | A0A545V2U5 | DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. | MutS domain V. | 0.804 |
| IF1G_02121 | IF1G_06086 | A0A545VDV3 | A0A545VVI6 | DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. | AAA-ATPase vps4-associated protein 1 domain-containing protein. | 0.420 |
| IF1G_02121 | IF1G_10969 | A0A545VDV3 | A0A545VJI6 | DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. | Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. | 0.985 |
| IF1G_04015 | IF1G_00830 | A0A545W244 | A0A545VGN3 | EXO1 protein. | DNA mismatch repair protein Msh4. | 0.839 |
| IF1G_04015 | IF1G_02121 | A0A545W244 | A0A545VDV3 | EXO1 protein. | DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. | 0.842 |
| IF1G_04015 | IF1G_04034 | A0A545W244 | A0A545V507 | EXO1 protein. | Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. | 0.978 |
page 1 of 5