STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IF1G_10414DNA repair protein Rad7. (593 aa)    
Predicted Functional Partners:
IF1G_00461
Skp1 family protein; Belongs to the SKP1 family.
    
 0.968
IF1G_07104
DNA repair protein Rhp26/Rad26.
    
 
 0.918
IF1G_10415
DNA repair protein RAD16.
    
 
 0.854
IF1G_02018
SCF ubiquitin ligase subunit CulC; Belongs to the cullin family.
    
 0.847
IF1G_06001
DNA excision repair protein.
    
 
 0.827
IF1G_02967
Cullin-1; Belongs to the cullin family.
    
 0.795
IF1G_06558
SCF complex subunit Skp1; Belongs to the SKP1 family.
   
 0.789
IF1G_00165
Ankyrin repeat protein.
   
 0.789
IF1G_01816
UV excision repair protein (RadW).
    
 0.755
IF1G_05624
Ubiquitin family domain-containing protein.
    
 0.694
Your Current Organism:
Cordyceps javanica
NCBI taxonomy Id: 43265
Other names: C. javanica, CBS 134.22, Cordyceps javanica (Frieder. & Bally) Kepler, B. Shrestha & Spatafora, 2017, Isaria javanica, Isaria javanicus, Paecilomyces javanica, Paecilomyces sp. ARSEF 3776, Paecilomyces sp. ARSEF 3778, Spicaria javanica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.