STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IF1G_07669Chromatin remodeling complex subunit (Chd3). (1494 aa)    
Predicted Functional Partners:
IF1G_08153
Chromatin assembly factor 1 subunit C.
   
 0.982
IF1G_01674
AT hook motif family protein.
    
 0.959
IF1G_05835
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.950
IF1G_04897
Histone deacetylase RPD3.
   
 0.950
IF1G_04425
Pre-mRNA splicing factor.
    
 0.940
IF1G_03906
Chromo domain-containing protein.
    
 0.880
IF1G_01885
Lysine-specific histone demethylase 1.
   
 0.863
IF1G_00007
Chromo domain-like protein.
    
 0.860
IF1G_07670
C-x8-C-x5-C-x3-H type zinc finger protein.
 
      0.846
IF1G_06044
Histone acetylase complex subunit.
    
 0.798
Your Current Organism:
Cordyceps javanica
NCBI taxonomy Id: 43265
Other names: C. javanica, CBS 134.22, Cordyceps javanica (Frieder. & Bally) Kepler, B. Shrestha & Spatafora, 2017, Isaria javanica, Isaria javanicus, Paecilomyces javanica, Paecilomyces sp. ARSEF 3776, Paecilomyces sp. ARSEF 3778, Spicaria javanica
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.