STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IF1G_06725Pseudouridylate synthase 3. (555 aa)    
Predicted Functional Partners:
IF1G_10292
tRNA pseudouridine synthase B.
   
 0.859
IF1G_00623
50S ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
  
  
 0.832
IF1G_03514
RNA polymerase II subunit 3.
  
  
 0.811
IF1G_01983
DNA-directed RNA polymerases I.
  
  
 0.811
IF1G_10307
Centromere/microtubule-binding protein cbf5.
   
 0.805
TRM82
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit TRM82; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.
   
 
 0.795
IF1G_01742
Pseudouridine synthase TruD/Pus7.
   
 
 0.766
IF1G_07451
Nucleolar protein,Nop52.
   
    0.760
IF1G_00598
Elongation factor 3.
  
   0.758
IF1G_04963
Ribosome assembly protein Noc2.
   
    0.734
Your Current Organism:
Cordyceps javanica
NCBI taxonomy Id: 43265
Other names: C. javanica, CBS 134.22, Cordyceps javanica (Frieder. & Bally) Kepler, B. Shrestha & Spatafora, 2017, Isaria javanica, Isaria javanicus, Paecilomyces javanica, Paecilomyces sp. ARSEF 3776, Paecilomyces sp. ARSEF 3778, Spicaria javanica
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