STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IF1G_06787Ribosome biogenesis ATPase RIX7. (821 aa)    
Predicted Functional Partners:
IF1G_07190
ATP-dependent RNA helicase DOB1.
   
 0.944
IF1G_08847
Ribosome biogenesis protein.
   
  
 0.907
IF1G_02387
Armadillo-type fold domain-containing protein.
   
    0.899
IF1G_10722
Cdc48-dependent protein degradation adaptor protein (Shp1).
   
 0.874
IF1G_05525
Protein NPL4.
    
 0.874
IF1G_05562
GTP-binding protein.
   
 
 0.870
IF1G_09508
ATP dependent RNA helicase (Dbp9).
   
 
 0.865
IF1G_05574
Ribosome biogenesis protein.
   
 
 0.862
ERB1
Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 
 0.860
IF1G_00270
Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family.
   
  
 0.855
Your Current Organism:
Cordyceps javanica
NCBI taxonomy Id: 43265
Other names: C. javanica, CBS 134.22, Cordyceps javanica (Frieder. & Bally) Kepler, B. Shrestha & Spatafora, 2017, Isaria javanica, Isaria javanicus, Paecilomyces javanica, Paecilomyces sp. ARSEF 3776, Paecilomyces sp. ARSEF 3778, Spicaria javanica
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