STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IF1G_03797Nonsense-mediated mRNA decay protein Upf3. (509 aa)    
Predicted Functional Partners:
IF1G_05161
Chitin synthase D.
   
 0.999
IF1G_07726
ATP-dependent helicase NAM7.
    
 0.998
IF1G_04493
PWI domain mRNA processing protein.
    
 0.998
IF1G_00607
RNA recognition domain-containing protein.
    
 0.998
IF1G_06536
Telomerase activating protein Est1.
   
 0.995
IF1G_07604
Mago nashi protein.
    
 0.988
IF1G_08372
ATP-dependent RNA helicase SUB2.
    
 0.986
IF1G_02150
Cell cycle control protein (Cwf22).
     
 0.985
IF1G_10784
Eukaryotic initiation factor 4A; Belongs to the DEAD box helicase family.
   
 0.981
IF1G_05074
RNA-binding protein 8A.
    
 0.981
Your Current Organism:
Cordyceps javanica
NCBI taxonomy Id: 43265
Other names: C. javanica, CBS 134.22, Cordyceps javanica (Frieder. & Bally) Kepler, B. Shrestha & Spatafora, 2017, Isaria javanica, Isaria javanicus, Paecilomyces javanica, Paecilomyces sp. ARSEF 3776, Paecilomyces sp. ARSEF 3778, Spicaria javanica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.