STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IF1G_00780Low temperature requirement A. (643 aa)    
Predicted Functional Partners:
IF1G_09303
Glycosyl hydrolase family 16.
    
 0.805
IF1G_02665
DNA excision repair protein (Rad2).
   
 0.739
IF1G_09835
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.731
IF1G_08604
Extracellular serine-rich protein.
    
 0.729
IF1G_05835
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.724
IF1G_04897
Histone deacetylase RPD3.
    
 0.724
IF1G_02818
GRF zinc finger domain-containing protein.
    
 0.722
IF1G_09834
Histone H3; Belongs to the histone H3 family.
    
 0.722
IF1G_08280
Uridine kinase; Belongs to the uridine kinase family.
    
 0.705
IF1G_06691
Uracil phosphoribosyltransferase.
    
 0.705
Your Current Organism:
Cordyceps javanica
NCBI taxonomy Id: 43265
Other names: C. javanica, CBS 134.22, Cordyceps javanica (Frieder. & Bally) Kepler, B. Shrestha & Spatafora, 2017, Isaria javanica, Isaria javanicus, Paecilomyces javanica, Paecilomyces sp. ARSEF 3776, Paecilomyces sp. ARSEF 3778, Spicaria javanica
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.