STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A5792_06465Unannotated protein. (448 aa)    
Predicted Functional Partners:
A5792_09235
Unannotated protein; Belongs to the sigma-70 factor family.
 
  
 0.535
A5792_06475
Unannotated protein.
 
     0.529
A5792_06485
Unannotated protein.
   
   0.502
A5792_23875
Unannotated protein; Belongs to the WXG100 family.
   
 
 0.468
A5792_06470
Unannotated protein.
  
    0.458
hemL
Unannotated protein.
       0.442
A5779_25295
Unannotated protein.
       0.439
A5792_06490
Unannotated protein.
       0.436
A5792_23720
Unannotated protein.
  
     0.409
Your Current Organism:
Mycolicibacterium peregrinum
NCBI taxonomy Id: 43304
Other names: ATCC 14467, CCUG 27976, CIP 105382, DSM 43271, JCM 12142, M. peregrinum, Mycobacterium fortuitum biovar peregrinum, Mycobacterium peregrinum, NCTC 10264
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.