STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001403655_01331Unannotated protein. (102 aa)    
Predicted Functional Partners:
GCA_001403655_01330
Unannotated protein.
 
  
 0.883
GCA_001403655_06412
Unannotated protein.
  
 0.672
GCA_001403655_03081
Unannotated protein.
  
 0.671
GCA_001403655_01373
Unannotated protein.
 
  
 0.575
GCA_001403655_01558
Unannotated protein.
 
  
 0.575
A5792_04870
Unannotated protein.
       0.554
rnz
Unannotated protein; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.
       0.496
GCA_001403655_06455
Unannotated protein.
 
  
 0.482
Your Current Organism:
Mycolicibacterium peregrinum
NCBI taxonomy Id: 43304
Other names: ATCC 14467, CCUG 27976, CIP 105382, DSM 43271, JCM 12142, M. peregrinum, Mycobacterium fortuitum biovar peregrinum, Mycobacterium peregrinum, NCTC 10264
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.