STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001403655_01510Unannotated protein. (173 aa)    
Predicted Functional Partners:
GCA_001403655_01509
Unannotated protein.
 
     0.802
GCA_001403655_01508
Unannotated protein.
       0.737
A5792_13925
Unannotated protein.
  
    0.631
A5792_08105
Unannotated protein.
  
    0.631
GCA_001403655_02076
Unannotated protein.
 
     0.610
GCA_001403655_01511
Unannotated protein.
       0.596
GCA_001403655_01506
Unannotated protein.
       0.583
GCA_001403655_01507
Unannotated protein.
       0.583
A5792_13385
Unannotated protein.
       0.582
A5792_28230
Unannotated protein.
       0.582
Your Current Organism:
Mycolicibacterium peregrinum
NCBI taxonomy Id: 43304
Other names: ATCC 14467, CCUG 27976, CIP 105382, DSM 43271, JCM 12142, M. peregrinum, Mycobacterium fortuitum biovar peregrinum, Mycobacterium peregrinum, NCTC 10264
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.