STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A4U5LSL6Pre-mRNA branch site p14-like family protein. (125 aa)    
Predicted Functional Partners:
A0A4U5NLP1
Splicing factor subunit; Belongs to the SF3B5 family.
   
 0.996
A0A4U5QT92
Splicing factor subunit; Belongs to the SF3B5 family.
   
 0.996
A0A4U5QC74
Splicing factor 3B subunit 1-like.
   
 0.993
A0A4U5QTM2
Splicing factor 3B subunit 1.
   
 0.993
A0A4U5LQ68
Pliceosome associated family protein.
    
 0.992
A0A4U5MQF1
CPSF_A domain-containing protein.
    
 0.992
A0A4U5PRP1
Pliceosome associated family protein.
    
 0.992
A0A4U5R3Y8
Splicing factor 3B subunit 3-like.
    
 0.991
A0A4U5R5M6
Splicing factor family protein.
    
 0.991
A0A4U5QCF6
Sm domain-containing protein.
   
 0.988
Your Current Organism:
Populus alba
NCBI taxonomy Id: 43335
Other names: P. alba, Populus alba L., abele, gin-doro, silver-leaf poplar, white poplar, xin bai yang
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.