A0A4U5MA79 protein (Populus alba) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A4U5MA79

AP2 domain-containing transcription factor family protein. (187 aa)

Predicted Functional Partners:

A0A4U5MNI6

0.705

A0A4U5QT24

0.704

A0A4U5R2W1

0.657

A0A4U5Q4R2

0.654

A0A4U5PMP3

0.623

A0A4U5QCK6

0.615

A0A4U5QUY7

0.586

A0A4U5P3V1

0.576

A0A4V6A3U1

0.545

A0A4U5R330

0.541

Your Current Organism:

Populus alba

NCBI taxonomy Id: 43335
Other names: P. alba, Populus alba L., abele, gin-doro, silver-leaf poplar, white poplar, xin bai yang

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A4U5MA79	A0A4U5MNI6	AP2 domain-containing transcription factor family protein.	Serine/threonine-protein phosphatase.	0.705
A0A4U5MA79	A0A4U5P3V1	AP2 domain-containing transcription factor family protein.	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	0.576
A0A4U5MA79	A0A4U5PMP3	AP2 domain-containing transcription factor family protein.	Rhodanese domain-containing protein.	0.623
A0A4U5MA79	A0A4U5Q4R2	AP2 domain-containing transcription factor family protein.	Photosystem II oxygen-evolving complex protein 2.	0.654
A0A4U5MA79	A0A4U5QCK6	AP2 domain-containing transcription factor family protein.	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	0.615
A0A4U5MA79	A0A4U5QT24	AP2 domain-containing transcription factor family protein.	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. BSU subfamily.	0.704
A0A4U5MA79	A0A4U5QUY7	AP2 domain-containing transcription factor family protein.	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	0.586
A0A4U5MA79	A0A4U5R2W1	AP2 domain-containing transcription factor family protein.	Photosystem II oxygen-evolving complex protein 2.	0.657
A0A4U5MA79	A0A4U5R330	AP2 domain-containing transcription factor family protein.	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	0.541
A0A4U5MA79	A0A4V6A3U1	AP2 domain-containing transcription factor family protein.	tRNA wybutosine-synthesizing protein 2/3/4.	0.545
A0A4U5MNI6	A0A4U5MA79	Serine/threonine-protein phosphatase.	AP2 domain-containing transcription factor family protein.	0.705
A0A4U5MNI6	A0A4U5QT24	Serine/threonine-protein phosphatase.	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. BSU subfamily.	0.619
A0A4U5MNI6	A0A4U5R330	Serine/threonine-protein phosphatase.	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	0.426
A0A4U5P3V1	A0A4U5MA79	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	AP2 domain-containing transcription factor family protein.	0.576
A0A4U5P3V1	A0A4U5Q4R2	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	Photosystem II oxygen-evolving complex protein 2.	0.956
A0A4U5P3V1	A0A4U5QCK6	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	0.946
A0A4U5P3V1	A0A4U5R2W1	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	Photosystem II oxygen-evolving complex protein 2.	0.956
A0A4U5P3V1	A0A4U5R330	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.	0.963
A0A4U5PMP3	A0A4U5MA79	Rhodanese domain-containing protein.	AP2 domain-containing transcription factor family protein.	0.623
A0A4U5PMP3	A0A4U5Q4R2	Rhodanese domain-containing protein.	Photosystem II oxygen-evolving complex protein 2.	0.406