A0A4U5MBD6 protein (Populus alba) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A4U5MBD6

Uncharacterized protein. (416 aa)

Predicted Functional Partners:

A0A4U5Q0W7

0.504

A0A4U5QHH1

0.504

A0A4U5Q4P1

0.481

A0A4U5QYG8

0.481

A0A4U5R3V3

0.446

A0A4U5QZH9

0.430

A0A4U5PR66

0.413

A0A4U5Q7L8

0.410

A0A4U5PMM7

0.402

Your Current Organism:

Populus alba

NCBI taxonomy Id: 43335
Other names: P. alba, Populus alba L., abele, gin-doro, silver-leaf poplar, white poplar, xin bai yang

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A4U5MBD6	A0A4U5PMM7	Uncharacterized protein.	Uncharacterized protein.	0.402
A0A4U5MBD6	A0A4U5PR66	Uncharacterized protein.	Far-red impaired responsive family protein.	0.413
A0A4U5MBD6	A0A4U5Q0W7	Uncharacterized protein.	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	0.504
A0A4U5MBD6	A0A4U5Q4P1	Uncharacterized protein.	TRANSPORT INHIBITOR RESPONSE 1 family protein.	0.481
A0A4U5MBD6	A0A4U5Q7L8	Uncharacterized protein.	BED-type domain-containing protein.	0.410
A0A4U5MBD6	A0A4U5QHH1	Uncharacterized protein.	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	0.504
A0A4U5MBD6	A0A4U5QYG8	Uncharacterized protein.	TRANSPORT INHIBITOR RESPONSE 1 family protein.	0.481
A0A4U5MBD6	A0A4U5QZH9	Uncharacterized protein.	BED-type domain-containing protein.	0.430
A0A4U5MBD6	A0A4U5R3V3	Uncharacterized protein.	BED-type domain-containing protein.	0.446
A0A4U5PMM7	A0A4U5MBD6	Uncharacterized protein.	Uncharacterized protein.	0.402
A0A4U5PR66	A0A4U5MBD6	Far-red impaired responsive family protein.	Uncharacterized protein.	0.413
A0A4U5PR66	A0A4U5QZH9	Far-red impaired responsive family protein.	BED-type domain-containing protein.	0.563
A0A4U5PR66	A0A4U5R3V3	Far-red impaired responsive family protein.	BED-type domain-containing protein.	0.563
A0A4U5Q0W7	A0A4U5MBD6	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	Uncharacterized protein.	0.504
A0A4U5Q0W7	A0A4U5Q4P1	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	TRANSPORT INHIBITOR RESPONSE 1 family protein.	0.445
A0A4U5Q4P1	A0A4U5MBD6	TRANSPORT INHIBITOR RESPONSE 1 family protein.	Uncharacterized protein.	0.481
A0A4U5Q4P1	A0A4U5Q0W7	TRANSPORT INHIBITOR RESPONSE 1 family protein.	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	0.445
A0A4U5Q4P1	A0A4U5QHH1	TRANSPORT INHIBITOR RESPONSE 1 family protein.	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	0.442
A0A4U5Q7L8	A0A4U5MBD6	BED-type domain-containing protein.	Uncharacterized protein.	0.410
A0A4U5QHH1	A0A4U5MBD6	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	Uncharacterized protein.	0.504