STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A4U5P2P3Uncharacterized protein. (172 aa)    
Predicted Functional Partners:
A0A4U5QW01
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
    
 0.621
A0A4U5PW12
Uncharacterized protein.
    
  0.560
A0A4U5Q4K9
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
  0.550
A0A4U5Q4S7
DNA-directed RNA polymerase II 36 kDa polypeptide B family protein.
   
 0.539
A0A4U5PX57
DNA-directed RNA polymerase II 13.6 kDa polypeptide family protein.
   
  0.527
A0A4U5Q3V0
Nuclear cap-binding protein subunit 2.
    
 0.525
A0A4U5QMY3
Nuclear cap-binding protein subunit 2.
    
 0.525
A0A4U5P7A6
MIF4G domain-containing protein.
    
 0.523
A0A4U5QZG3
Nuclear cap-binding protein subunit 1.
    
 0.523
A0A4U5QJ24
Putative small nuclear ribonucleoprotein F.
   
 0.509
Your Current Organism:
Populus alba
NCBI taxonomy Id: 43335
Other names: P. alba, Populus alba L., abele, gin-doro, silver-leaf poplar, white poplar, xin bai yang
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.