A0A4U5PSR0 protein (Populus alba) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A4U5PSR0

HMA domain-containing protein. (165 aa)

Predicted Functional Partners:

A0A4U5P4D1

0.465

A0A4U5P6C2

0.451

A0A4U5QXI6

0.441

A0A4V6XWI1

0.427

A0A4U5QFD5

0.425

A0A4U5Q2Y1

0.410

A0A4U5Q1Z6

0.408

A0A4U5QX31

0.406

A0A4U5P6M6

0.405

A0A4U5Q812

0.401

Your Current Organism:

Populus alba

NCBI taxonomy Id: 43335
Other names: P. alba, Populus alba L., abele, gin-doro, silver-leaf poplar, white poplar, xin bai yang

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A4U5P4D1	A0A4U5P6M6	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.	Uncharacterized protein.	0.407
A0A4U5P4D1	A0A4U5PSR0	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.	HMA domain-containing protein.	0.465
A0A4U5P4D1	A0A4U5Q812	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.	Uncharacterized protein.	0.451
A0A4U5P4D1	A0A4U5QFD5	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.	Uncharacterized protein.	0.451
A0A4U5P4D1	A0A4U5QX31	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.	Non-specific lipid-transfer protein; Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.	0.433
A0A4U5P6C2	A0A4U5PSR0	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.	HMA domain-containing protein.	0.451
A0A4U5P6C2	A0A4U5Q812	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.	Uncharacterized protein.	0.443
A0A4U5P6C2	A0A4U5QFD5	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.	Uncharacterized protein.	0.465
A0A4U5P6C2	A0A4U5QX31	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.	Non-specific lipid-transfer protein; Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.	0.434
A0A4U5P6M6	A0A4U5P4D1	Uncharacterized protein.	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.	0.407
A0A4U5P6M6	A0A4U5PSR0	Uncharacterized protein.	HMA domain-containing protein.	0.405
A0A4U5P6M6	A0A4U5Q1Z6	Uncharacterized protein.	Basic 7S globulin-like isoform X1.	0.470
A0A4U5P6M6	A0A4U5Q812	Uncharacterized protein.	Uncharacterized protein.	0.535
A0A4U5P6M6	A0A4U5QFD5	Uncharacterized protein.	Uncharacterized protein.	0.502
A0A4U5P6M6	A0A4U5QX31	Uncharacterized protein.	Non-specific lipid-transfer protein; Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.	0.550
A0A4U5PSR0	A0A4U5P4D1	HMA domain-containing protein.	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.	0.465
A0A4U5PSR0	A0A4U5P6C2	HMA domain-containing protein.	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.	0.451
A0A4U5PSR0	A0A4U5P6M6	HMA domain-containing protein.	Uncharacterized protein.	0.405
A0A4U5PSR0	A0A4U5Q1Z6	HMA domain-containing protein.	Basic 7S globulin-like isoform X1.	0.408
A0A4U5PSR0	A0A4U5Q2Y1	HMA domain-containing protein.	Basic 7S globulin-like; Belongs to the peptidase A1 family.	0.410