STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A4U5Q8Z0Histone H2B; Belongs to the histone H2B family. (139 aa)    
Predicted Functional Partners:
A0A4U5QZS5
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
  
 0.960
A0A4U5NST3
Uncharacterized protein.
   
 0.904
A0A4U5QR85
RNA polymerase-associated protein CTR9-like.
   
 0.885
A0A4U5R060
Uncharacterized protein.
    
 0.868
A0A4U5R2G8
Putative lysine-specific demethylase ELF6.
    
 0.868
A0A4U5Q5N2
Histone H2A; Belongs to the histone H2A family.
   
 0.861
A0A4U5QXA5
Chromatin structure-remodeling complex protein SYD-like isoform X2.
    
 0.857
A0A4V6A8S1
Chromatin structure-remodeling complex protein SYD-like isoform X2.
    
 0.857
A0A4U5Q4S7
DNA-directed RNA polymerase II 36 kDa polypeptide B family protein.
    
 0.856
A0A4V6ABZ5
Histone H3-like centromeric protein HTR12.
   
 0.840
Your Current Organism:
Populus alba
NCBI taxonomy Id: 43335
Other names: P. alba, Populus alba L., abele, gin-doro, silver-leaf poplar, white poplar, xin bai yang
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.