STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A4U5QH41Zinc finger CCCH domain-containing protein 30. (192 aa)    
Predicted Functional Partners:
A0A4U5QJ24
Putative small nuclear ribonucleoprotein F.
   
 0.994
A0A4U5NLP1
Splicing factor subunit; Belongs to the SF3B5 family.
   
 0.989
A0A4U5QT92
Splicing factor subunit; Belongs to the SF3B5 family.
   
 0.989
A0A4U5NAC0
Small nuclear ribonucleoprotein G.
   
 0.987
A0A4U5PRA3
Small nuclear ribonucleoprotein G.
   
 0.987
A0A4U5LSL6
Pre-mRNA branch site p14-like family protein.
   
 0.985
A0A4U5PWH9
Splicing factor 3B subunit 6-like protein.
   
 0.985
A0A4U5PLT6
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.984
A0A4U5Q865
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.984
A0A4U5QS21
Matrin-type domain-containing protein.
    
 0.980
Your Current Organism:
Populus alba
NCBI taxonomy Id: 43335
Other names: P. alba, Populus alba L., abele, gin-doro, silver-leaf poplar, white poplar, xin bai yang
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.