STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A4U5QWJ0Pentatricopeptide repeat-containing protein. (386 aa)    
Predicted Functional Partners:
A0A4U5QTP6
Protein ROOT PRIMORDIUM DEFECTIVE 1.
  
   
 0.679
A0A4U5P528
Uncharacterized protein.
      
 0.588
A0A4U5P5G1
Uncharacterized protein.
      
 0.588
A0A4U5PQ99
Pentatricopeptide repeat-containing protein.
      
 0.588
A0A4U5QV79
Uncharacterized protein.
   
  
 0.546
A0A4U5QI49
DYW_deaminase domain-containing protein.
   
  
 0.517
A0A4U5NMH4
PORR domain-containing protein.
  
     0.511
A0A4U5QD11
Uncharacterized protein.
      
 0.508
A0A4U5Q6G5
Pentatricopeptide repeat-containing protein.
      
 0.489
A0A4U5NQP3
Methanol O-anthraniloyltransferase-like.
  
     0.486
Your Current Organism:
Populus alba
NCBI taxonomy Id: 43335
Other names: P. alba, Populus alba L., abele, gin-doro, silver-leaf poplar, white poplar, xin bai yang
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.