A0A4U5QX91 protein (Populus alba) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A4U5QX91

Uncharacterized protein. (246 aa)

Predicted Functional Partners:

A0A4V6A9K8

0.529

A0A4U5PYX1

0.496

A0A4U5QMN9

0.489

A0A4U5P7N2

0.483

A0A4U5QRM6

0.433

A0A4U5MBX5

0.432

A0A4U5PS91

0.422

A0A4U5NAH7

0.413

A0A4U5NN53

0.410

A0A4U5PR58

0.408

Your Current Organism:

Populus alba

NCBI taxonomy Id: 43335
Other names: P. alba, Populus alba L., abele, gin-doro, silver-leaf poplar, white poplar, xin bai yang

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A4U5MBX5	A0A4U5NAH7	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.516
A0A4U5MBX5	A0A4U5PS91	WD_REPEATS_REGION domain-containing protein.	Protein DEFECTIVE IN MERISTEM SILENCING 3-like.	0.524
A0A4U5MBX5	A0A4U5QX91	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.432
A0A4U5NAH7	A0A4U5MBX5	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.516
A0A4U5NAH7	A0A4U5P7N2	Uncharacterized protein.	AAI domain-containing protein.	0.499
A0A4U5NAH7	A0A4U5QRM6	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.514
A0A4U5NAH7	A0A4U5QX91	Uncharacterized protein.	Uncharacterized protein.	0.413
A0A4U5NN53	A0A4U5QX91	Vesicle tethering family protein.	Uncharacterized protein.	0.410
A0A4U5P7N2	A0A4U5NAH7	AAI domain-containing protein.	Uncharacterized protein.	0.499
A0A4U5P7N2	A0A4U5PR58	AAI domain-containing protein.	Uncharacterized protein.	0.470
A0A4U5P7N2	A0A4U5PS91	AAI domain-containing protein.	Protein DEFECTIVE IN MERISTEM SILENCING 3-like.	0.480
A0A4U5P7N2	A0A4U5PYX1	AAI domain-containing protein.	Mitochondrial substrate carrier family protein E; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.466
A0A4U5P7N2	A0A4U5QX91	AAI domain-containing protein.	Uncharacterized protein.	0.483
A0A4U5PR58	A0A4U5P7N2	Uncharacterized protein.	AAI domain-containing protein.	0.470
A0A4U5PR58	A0A4U5PYX1	Uncharacterized protein.	Mitochondrial substrate carrier family protein E; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.425
A0A4U5PR58	A0A4U5QX91	Uncharacterized protein.	Uncharacterized protein.	0.408
A0A4U5PS91	A0A4U5MBX5	Protein DEFECTIVE IN MERISTEM SILENCING 3-like.	WD_REPEATS_REGION domain-containing protein.	0.524
A0A4U5PS91	A0A4U5P7N2	Protein DEFECTIVE IN MERISTEM SILENCING 3-like.	AAI domain-containing protein.	0.480
A0A4U5PS91	A0A4U5QRM6	Protein DEFECTIVE IN MERISTEM SILENCING 3-like.	WD_REPEATS_REGION domain-containing protein.	0.523
A0A4U5PS91	A0A4U5QX91	Protein DEFECTIVE IN MERISTEM SILENCING 3-like.	Uncharacterized protein.	0.422