STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A4U5R6Z9RING-type E3 ubiquitin transferase. (411 aa)    
Predicted Functional Partners:
A0A4U5NLM4
Adenosine 5' phosphosulfate reductase.
    
  0.885
A0A4U5PQI9
Uncharacterized protein.
    
  0.885
A0A4U5Q4G6
Uncharacterized protein.
    
  0.885
A0A4V6ACE6
5'-adenylylsulfate reductase 3, chloroplastic-like isoform X1.
    
  0.885
A0A4U5PUW9
Uncharacterized protein.
    
 0.874
A0A4U5QSR8
Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.
    
 0.874
A0A4U5PW69
Uncharacterized protein.
  
 0.625
A0A4U5QEZ4
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
    
  0.536
A0A4U5QAN1
Uncharacterized protein.
    
 0.491
A0A4U5MI78
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
  0.466
Your Current Organism:
Populus alba
NCBI taxonomy Id: 43335
Other names: P. alba, Populus alba L., abele, gin-doro, silver-leaf poplar, white poplar, xin bai yang
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