STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A4V6AA53Uncharacterized protein. (457 aa)    
Predicted Functional Partners:
A0A4U5QW01
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
    
 
 0.803
A0A4U5M4X7
RNA-binding protein 25-like isoform X1.
   
 
 0.774
A0A4U5NL98
Uncharacterized protein.
   
 
 0.774
A0A4U5MQF1
CPSF_A domain-containing protein.
    
 
 0.772
A0A4U5QVM5
E3 ubiquitin protein ligase.
  
 0.767
A0A4U5MYW1
E3 ubiquitin protein ligase.
  
 0.762
A0A4U5MPR3
Cell division cycle 5-like protein.
   
   0.748
A0A4U5QLF8
Uncharacterized protein.
   
   0.748
A0A4U5R3Y8
Splicing factor 3B subunit 3-like.
    
 
 0.746
A0A4U5R5M6
Splicing factor family protein.
    
 
 0.746
Your Current Organism:
Populus alba
NCBI taxonomy Id: 43335
Other names: P. alba, Populus alba L., abele, gin-doro, silver-leaf poplar, white poplar, xin bai yang
Server load: low (18%) [HD]