STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHDC4KH domain containing 4, pre-mRNA splicing factor. (614 aa)    
Predicted Functional Partners:
ZNF529
Zinc finger protein 529.
      
 0.542
WDPCP
WD repeat containing planar cell polarity effector.
      
 0.482
MFSD13A
Major facilitator superfamily domain containing 13A.
      
 0.482
LUC7L3
LUC7 like 3 pre-mRNA splicing factor.
   
  
 0.440
LRRN2
Leucine rich repeat neuronal 2.
      
 0.426
PRPF38B
pre-mRNA processing factor 38B.
   
    0.422
SIKE1
Suppressor of IKBKE 1.
      
 0.420
UQCC1
Ubiquinol-cytochrome c reductase complex assembly factor 1.
      
 0.420
Your Current Organism:
Bison bison
NCBI taxonomy Id: 43346
Other names: B. bison bison, Bison bison bison, Bos bison bison
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.