ORA41366.1 protein (Mycobacterium branderi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Mycobacterium branderi

NCBI taxonomy Id: 43348
Other names: ATCC 51789, CIP 104592, DSM 44624, JCM 12687, M. branderi, strain 52157

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ORA32048.1	ORA32072.1	BST20_25810	BST20_25805	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.980
ORA32048.1	ORA41366.1	BST20_25810	BST20_04470	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Signal peptide peptidase SppA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.418
ORA32072.1	ORA32048.1	BST20_25805	BST20_25810	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.980
ORA32072.1	ORA41181.1	BST20_25805	BST20_03390	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.653
ORA32072.1	ORA41366.1	BST20_25805	BST20_04470	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Signal peptide peptidase SppA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.504
ORA41181.1	ORA32072.1	BST20_03390	BST20_25805	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.653
ORA41181.1	ORA41366.1	BST20_03390	BST20_04470	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Signal peptide peptidase SppA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.418
ORA41366.1	ORA32048.1	BST20_04470	BST20_25810	Signal peptide peptidase SppA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.418
ORA41366.1	ORA32072.1	BST20_04470	BST20_25805	Signal peptide peptidase SppA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.504
ORA41366.1	ORA41181.1	BST20_04470	BST20_03390	Signal peptide peptidase SppA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.418
ORA41366.1	ORA41367.1	BST20_04470	BST20_04475	Signal peptide peptidase SppA; Derived by automated computational analysis using gene prediction method: Protein Homology.	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.630
ORA41366.1	ORA41368.1	BST20_04470	BST20_04485	Signal peptide peptidase SppA; Derived by automated computational analysis using gene prediction method: Protein Homology.	EstA family serine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.520
ORA41366.1	ORA41417.1	BST20_04470	BST20_04765	Signal peptide peptidase SppA; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.439
ORA41366.1	ORA41769.1	BST20_04470	BST20_04480	Signal peptide peptidase SppA; Derived by automated computational analysis using gene prediction method: Protein Homology.	NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.580
ORA41366.1	nnrE	BST20_04470	BST20_04050	Signal peptide peptidase SppA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bifunctional ADP-dependent (S)-NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-spec [...]	0.428
ORA41367.1	ORA41366.1	BST20_04475	BST20_04470	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Signal peptide peptidase SppA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.630
ORA41367.1	ORA41368.1	BST20_04475	BST20_04485	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	EstA family serine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.677
ORA41367.1	ORA41769.1	BST20_04475	BST20_04480	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.796
ORA41368.1	ORA41366.1	BST20_04485	BST20_04470	EstA family serine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Signal peptide peptidase SppA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.520
ORA41368.1	ORA41367.1	BST20_04485	BST20_04475	EstA family serine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.677