ORA40278.1 protein (Mycobacterium branderi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Mycobacterium branderi

NCBI taxonomy Id: 43348
Other names: ATCC 51789, CIP 104592, DSM 44624, JCM 12687, M. branderi, strain 52157

Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ORA32752.1	ORA39501.1	BST20_24085	BST20_08280	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	MCE family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.965
ORA32752.1	ORA40276.1	BST20_24085	BST20_06900	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mce protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.609
ORA32752.1	ORA40278.1	BST20_24085	BST20_06910	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.919
ORA32752.1	ORA40279.1	BST20_24085	BST20_06925	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.764
ORA32752.1	ORA40280.1	BST20_24085	BST20_06930	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	MCE-family protein MCE3A; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.782
ORA32752.1	ORA40456.1	BST20_24085	BST20_06915	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780
ORA32752.1	ORA40458.1	BST20_24085	BST20_06935	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.888
ORA32752.1	ORA40459.1	BST20_24085	BST20_06940	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.818
ORA34355.1	ORA39501.1	BST20_20245	BST20_08280	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	MCE family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.965
ORA34355.1	ORA40276.1	BST20_20245	BST20_06900	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mce protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.592
ORA34355.1	ORA40278.1	BST20_20245	BST20_06910	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.919
ORA34355.1	ORA40279.1	BST20_20245	BST20_06925	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
ORA34355.1	ORA40280.1	BST20_20245	BST20_06930	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	MCE-family protein MCE3A; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
ORA34355.1	ORA40456.1	BST20_20245	BST20_06915	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
ORA34355.1	ORA40458.1	BST20_20245	BST20_06935	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.896
ORA34355.1	ORA40459.1	BST20_20245	BST20_06940	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.837
ORA39501.1	ORA32752.1	BST20_08280	BST20_24085	MCE family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.965
ORA39501.1	ORA34355.1	BST20_08280	BST20_20245	MCE family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.965
ORA39501.1	ORA40276.1	BST20_08280	BST20_06900	MCE family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mce protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.674
ORA39501.1	ORA40278.1	BST20_08280	BST20_06910	MCE family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920