ORA39453.1 protein (Mycobacterium branderi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Mycobacterium branderi

NCBI taxonomy Id: 43348
Other names: ATCC 51789, CIP 104592, DSM 44624, JCM 12687, M. branderi, strain 52157

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ORA36599.1	ORA39453.1	BST20_14865	BST20_08005	Copper resistance protein CopC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.789
ORA39449.1	ORA39453.1	BST20_07985	BST20_08005	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.466
ORA39449.1	apeB	BST20_07985	BST20_08000	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	M18 family aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.491
ORA39453.1	ORA36599.1	BST20_08005	BST20_14865	Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Copper resistance protein CopC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.789
ORA39453.1	ORA39449.1	BST20_08005	BST20_07985	Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.466
ORA39453.1	ORA39454.1	BST20_08005	BST20_08010	Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bacteriocin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
ORA39453.1	apeB	BST20_08005	BST20_08000	Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	M18 family aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.759
ORA39453.1	atpH	BST20_08005	BST20_28615	Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	F0F1 ATP synthase subunit B/delta; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0). This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction; Belongs to the ATPase delta chain family.	0.471
ORA39453.1	tatB	BST20_08005	BST20_16980	Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Twin arginine-targeting protein translocase TatB; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.	0.493
ORA39454.1	ORA39453.1	BST20_08010	BST20_08005	Bacteriocin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
ORA39454.1	apeB	BST20_08010	BST20_08000	Bacteriocin; Derived by automated computational analysis using gene prediction method: Protein Homology.	M18 family aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.759
apeB	ORA39449.1	BST20_08000	BST20_07985	M18 family aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.491
apeB	ORA39453.1	BST20_08000	BST20_08005	M18 family aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.759
apeB	ORA39454.1	BST20_08000	BST20_08010	M18 family aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bacteriocin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.759
atpH	ORA39453.1	BST20_28615	BST20_08005	F0F1 ATP synthase subunit B/delta; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0). This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction; Belongs to the ATPase delta chain family.	Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.471
tatB	ORA39453.1	BST20_16980	BST20_08005	Twin arginine-targeting protein translocase TatB; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.	Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.493