STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ORA39749.1glutamyl-tRNA amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (154 aa)    
Predicted Functional Partners:
ORA39748.1
LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.776
ORA39788.1
Peptidase C56; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.739
rpsO
30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
  
    0.588
ORA31415.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.556
ORA31416.1
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.556
ORA31417.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.556
ORA31418.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.556
ORA39789.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.547
rpmE
50S ribosomal protein L31; Binds the 23S rRNA.
   
    0.491
ORA39747.1
Methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.476
Your Current Organism:
Mycobacterium branderi
NCBI taxonomy Id: 43348
Other names: ATCC 51789, CIP 104592, DSM 44624, JCM 12687, M. branderi, strain 52157
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.