Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ORA36599.1Copper resistance protein CopC; Derived by automated computational analysis using gene prediction method: Protein Homology. (171 aa)    
Predicted Functional Partners:
ORA36735.1
Nuclear export factor GLE1; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.985
ORA38356.1
Copper resistance protein CopD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.889
ORA36598.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.833
ORA29368.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.826
ORA39453.1
Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.789
ORA36601.1
S-adenosylmethionine--2-demethylmenaquinone methyltransferase; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions.
       0.664
ORA36734.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.632
ORA36600.1
Nucleoid-structuring protein H-NS; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.542
ORA39643.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.418
Your Current Organism:
Mycobacterium branderi
NCBI taxonomy Id: 43348
Other names: ATCC 51789, CIP 104592, DSM 44624, JCM 12687, M. branderi, strain 52157
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