Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ORA32411.1AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (490 aa)    
Predicted Functional Partners:
ORA38421.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.865
ORA31819.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.865
ORA32409.1
cyclohexanecarboxylate-CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.846
ORA37425.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.838
ORA32410.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.802
ORA32408.1
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.793
ORA38459.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.791
ORA32440.1
Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.779
ORA33548.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.753
ORA32405.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.658
Your Current Organism:
Mycobacterium branderi
NCBI taxonomy Id: 43348
Other names: ATCC 51789, CIP 104592, DSM 44624, JCM 12687, M. branderi, strain 52157
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