STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000719975_04381Unannotated protein. (298 aa)    
Predicted Functional Partners:
GCA_000719975_04380
Unannotated protein.
       0.832
GCA_000719975_04379
Unannotated protein.
       0.649
GCA_000719975_02508
Unannotated protein.
    
 0.607
GCA_000719975_01356
Unannotated protein.
  
 
  0.587
GCA_000719975_01944
Unannotated protein.
  
 
  0.574
GCA_000719975_01795
Unannotated protein.
    
  0.547
GCA_000719975_02202
Unannotated protein.
    
  0.547
GCA_000719975_03460
Unannotated protein.
    
  0.547
GCA_000719975_03686
Unannotated protein.
    
  0.547
GCA_000719975_04378
Unannotated protein.
       0.488
Your Current Organism:
Prauserella rugosa
NCBI taxonomy Id: 43354
Other names: ATCC 43014, Amycolatopsis rugosa, CIP 106520, DSM 43194, IFO 14506, IMRU 3760, JCM 9736, NBRC 14506, NCIMB 8926, NRRL B-2295, Nocardia rugosa, P. rugosa, Proactinomyces rugosa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.