Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KTT15669.1Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (506 aa)    
Predicted Functional Partners:
KTT22590.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.947
KTT11524.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.939
KTT11852.1
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.936
KTT27219.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.927
KTT25238.1
RNA polymerase subunit sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.924
KTT21842.1
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.908
KTT22573.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.899
KTT27554.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.887
KTT16650.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.879
KTT16354.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.851
Your Current Organism:
Pseudacidovorax intermedius
NCBI taxonomy Id: 433924
Other names: CCUG 54492, CIP 109510, P. intermedius, Pseudacidovorax intermedius Kampfer et al. 2008, strain CC-21
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