STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Cooccurrence
Coexpression
Experiments
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[Homology]
Score
NRI_0065Integral membrane protein DUF6; Identified by match to protein family HMM PF00892. (285 aa)    
Predicted Functional Partners:
NRI_0701
Pentapeptide repeat domain protein; Identified by match to protein family HMM PF00805.
 
 
   0.639
NRI_0234
Conserved hypothetical protein.
 
     0.570
secY
Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
  
   0.541
NRI_0379
ATP synthase F0, B' chain; Identified by match to protein family HMM PF02326.
  
     0.503
NRI_0022
Conserved hypothetical protein; Identified by match to protein family HMM PF00023.
 
 
   0.482
NRI_0499
Conserved hypothetical protein.
 
     0.482
NRI_0715
Type IV secretion system protein VirB10; Identified by match to protein family HMM PF03743.
    
   0.464
NRI_0716
Type IV secretion system protein VirB10, Frame-Shift.
    
   0.464
NRI_0897
Conserved hypothetical protein.
  
     0.429
NRI_0687
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
     0.413
Your Current Organism:
Neorickettsia risticii
NCBI taxonomy Id: 434131
Other names: N. risticii str. Illinois, Neorickettsia risticii str. Illinois, Neorickettsia risticii strain Illinois
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.