| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| NRI_0261 | NRI_0658 | NRI_0261 | NRI_0658 | Ribosomal protein S19; Identified by match to protein family HMM PF00203; Belongs to the universal ribosomal protein uS19 family. | L1P family of ribosomal proteins; Identified by match to protein family HMM PF00687; Belongs to the universal ribosomal protein uL1 family. | 0.993 |
| NRI_0261 | rimM | NRI_0261 | NRI_0125 | Ribosomal protein S19; Identified by match to protein family HMM PF00203; Belongs to the universal ribosomal protein uS19 family. | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.952 |
| NRI_0261 | rplM | NRI_0261 | NRI_0808 | Ribosomal protein S19; Identified by match to protein family HMM PF00203; Belongs to the universal ribosomal protein uS19 family. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.994 |
| NRI_0261 | rplS | NRI_0261 | NRI_0862 | Ribosomal protein S19; Identified by match to protein family HMM PF00203; Belongs to the universal ribosomal protein uS19 family. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.984 |
| NRI_0261 | rpsB | NRI_0261 | NRI_0907 | Ribosomal protein S19; Identified by match to protein family HMM PF00203; Belongs to the universal ribosomal protein uS19 family. | Ribosomal protein S2; Identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011; Belongs to the universal ribosomal protein uS2 family. | 0.997 |
| NRI_0261 | rpsF | NRI_0261 | NRI_0062 | Ribosomal protein S19; Identified by match to protein family HMM PF00203; Belongs to the universal ribosomal protein uS19 family. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.990 |
| NRI_0261 | rpsL | NRI_0261 | NRI_0666 | Ribosomal protein S19; Identified by match to protein family HMM PF00203; Belongs to the universal ribosomal protein uS19 family. | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.998 |
| NRI_0261 | rpsP | NRI_0261 | NRI_0124 | Ribosomal protein S19; Identified by match to protein family HMM PF00203; Belongs to the universal ribosomal protein uS19 family. | Ribosomal protein S16; Identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family. | 0.984 |
| NRI_0261 | secY | NRI_0261 | NRI_0276 | Ribosomal protein S19; Identified by match to protein family HMM PF00203; Belongs to the universal ribosomal protein uS19 family. | Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.984 |
| NRI_0261 | trmD | NRI_0261 | NRI_0863 | Ribosomal protein S19; Identified by match to protein family HMM PF00203; Belongs to the universal ribosomal protein uS19 family. | tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.749 |
| NRI_0658 | NRI_0261 | NRI_0658 | NRI_0261 | L1P family of ribosomal proteins; Identified by match to protein family HMM PF00687; Belongs to the universal ribosomal protein uL1 family. | Ribosomal protein S19; Identified by match to protein family HMM PF00203; Belongs to the universal ribosomal protein uS19 family. | 0.993 |
| NRI_0658 | rimM | NRI_0658 | NRI_0125 | L1P family of ribosomal proteins; Identified by match to protein family HMM PF00687; Belongs to the universal ribosomal protein uL1 family. | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.904 |
| NRI_0658 | rplM | NRI_0658 | NRI_0808 | L1P family of ribosomal proteins; Identified by match to protein family HMM PF00687; Belongs to the universal ribosomal protein uL1 family. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.995 |
| NRI_0658 | rplS | NRI_0658 | NRI_0862 | L1P family of ribosomal proteins; Identified by match to protein family HMM PF00687; Belongs to the universal ribosomal protein uL1 family. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.993 |
| NRI_0658 | rpsB | NRI_0658 | NRI_0907 | L1P family of ribosomal proteins; Identified by match to protein family HMM PF00687; Belongs to the universal ribosomal protein uL1 family. | Ribosomal protein S2; Identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011; Belongs to the universal ribosomal protein uS2 family. | 0.993 |
| NRI_0658 | rpsF | NRI_0658 | NRI_0062 | L1P family of ribosomal proteins; Identified by match to protein family HMM PF00687; Belongs to the universal ribosomal protein uL1 family. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.991 |
| NRI_0658 | rpsL | NRI_0658 | NRI_0666 | L1P family of ribosomal proteins; Identified by match to protein family HMM PF00687; Belongs to the universal ribosomal protein uL1 family. | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.995 |
| NRI_0658 | rpsP | NRI_0658 | NRI_0124 | L1P family of ribosomal proteins; Identified by match to protein family HMM PF00687; Belongs to the universal ribosomal protein uL1 family. | Ribosomal protein S16; Identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family. | 0.990 |
| NRI_0658 | secY | NRI_0658 | NRI_0276 | L1P family of ribosomal proteins; Identified by match to protein family HMM PF00687; Belongs to the universal ribosomal protein uL1 family. | Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.986 |
| NRI_0658 | trmD | NRI_0658 | NRI_0863 | L1P family of ribosomal proteins; Identified by match to protein family HMM PF00687; Belongs to the universal ribosomal protein uL1 family. | tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.903 |
