Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
NRI_0157 | NRI_0158 | NRI_0157 | NRI_0158 | CcmB-related protein. | DnaK suppressor protein; Identified by match to protein family HMM PF01258. | 0.547 |
NRI_0157 | NRI_0482 | NRI_0157 | NRI_0482 | CcmB-related protein. | Heme exporter protein, CcmC family; Identified by match to protein family HMM PF01578; match to protein family HMM TIGR01191. | 0.800 |
NRI_0157 | NRI_0678 | NRI_0157 | NRI_0678 | CcmB-related protein. | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | 0.800 |
NRI_0157 | thyX | NRI_0157 | NRI_0159 | CcmB-related protein. | Thymidylate synthase, flavin-dependent; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant. | 0.416 |
NRI_0158 | NRI_0157 | NRI_0158 | NRI_0157 | DnaK suppressor protein; Identified by match to protein family HMM PF01258. | CcmB-related protein. | 0.547 |
NRI_0158 | thyX | NRI_0158 | NRI_0159 | DnaK suppressor protein; Identified by match to protein family HMM PF01258. | Thymidylate synthase, flavin-dependent; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant. | 0.571 |
NRI_0482 | NRI_0157 | NRI_0482 | NRI_0157 | Heme exporter protein, CcmC family; Identified by match to protein family HMM PF01578; match to protein family HMM TIGR01191. | CcmB-related protein. | 0.800 |
NRI_0482 | NRI_0678 | NRI_0482 | NRI_0678 | Heme exporter protein, CcmC family; Identified by match to protein family HMM PF01578; match to protein family HMM TIGR01191. | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | 0.998 |
NRI_0678 | NRI_0157 | NRI_0678 | NRI_0157 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | CcmB-related protein. | 0.800 |
NRI_0678 | NRI_0482 | NRI_0678 | NRI_0482 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | Heme exporter protein, CcmC family; Identified by match to protein family HMM PF01578; match to protein family HMM TIGR01191. | 0.998 |
thyX | NRI_0157 | NRI_0159 | NRI_0157 | Thymidylate synthase, flavin-dependent; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant. | CcmB-related protein. | 0.416 |
thyX | NRI_0158 | NRI_0159 | NRI_0158 | Thymidylate synthase, flavin-dependent; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant. | DnaK suppressor protein; Identified by match to protein family HMM PF01258. | 0.571 |