STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NRI_0192Putative transporter; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. (382 aa)    
Predicted Functional Partners:
recF
Putative DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP.
       0.782
NRI_0150
Identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835.
 
  
 0.682
NRI_0046
Putative succinate dehydrogenase, hydrophobic membrane anchor protein.
   
    0.658
NRI_0399
NADP-dependent malic enzyme, N-terminal fragment; Contains a authentic frameshift if combined with NRI_0400 (ORF00385) according to frameshift analysis. Identified by match to protein family HMM PF00390; match to protein family HMM PF03949.
  
  
 0.634
NRI_0400
NADP-dependent malic enzyme, C-terminal fragment; Contains a frameshift based on matches to NSE_0420, if combined with NRI_0399 (ORF00384).
  
  
 0.634
NRI_0700
Putative sodium:proline symporter; Identified by match to protein family HMM PF00474; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
  
 0.593
NRI_0853
Glutathione-regulated potassium-efflux system protein; Identified by match to protein family HMM PF00999; match to protein family HMM PF02254; match to protein family HMM TIGR00932; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
     
 0.584
NRI_0191
Hypothetical protein; Identified by Glimmer2; putative.
       0.522
NRI_0814
Major facilitator family transporter; Identified by match to protein family HMM PF07690.
 
   
 0.509
cckA
Sensor histidine kinase/response regulator CckA; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.
     
 0.501
Your Current Organism:
Neorickettsia risticii
NCBI taxonomy Id: 434131
Other names: N. risticii str. Illinois, Neorickettsia risticii str. Illinois, Neorickettsia risticii strain Illinois
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