Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| NRI_0261 | efp | NRI_0261 | NRI_0189 | Ribosomal protein S19; Identified by match to protein family HMM PF00203; Belongs to the universal ribosomal protein uS19 family. | Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | 0.999 |
| NRI_0261 | rplI | NRI_0261 | NRI_0060 | Ribosomal protein S19; Identified by match to protein family HMM PF00203; Belongs to the universal ribosomal protein uS19 family. | Ribosomal protein L9; Binds to the 23S rRNA. | 0.999 |
| NRI_0261 | rplT | NRI_0261 | NRI_0207 | Ribosomal protein S19; Identified by match to protein family HMM PF00203; Belongs to the universal ribosomal protein uS19 family. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.999 |
| NRI_0261 | rpmG | NRI_0261 | NRI_0248 | Ribosomal protein S19; Identified by match to protein family HMM PF00203; Belongs to the universal ribosomal protein uS19 family. | Ribosomal protein L33; Identified by match to protein family HMM PF00471; match to protein family HMM TIGR01023. | 0.999 |
| NRI_0261 | rpmI | NRI_0261 | NRI_0206 | Ribosomal protein S19; Identified by match to protein family HMM PF00203; Belongs to the universal ribosomal protein uS19 family. | Conserved domain protein; Belongs to the bacterial ribosomal protein bL35 family. | 0.999 |
| NRI_0261 | rpsF | NRI_0261 | NRI_0062 | Ribosomal protein S19; Identified by match to protein family HMM PF00203; Belongs to the universal ribosomal protein uS19 family. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
| NRI_0261 | rpsJ | NRI_0261 | NRI_0256 | Ribosomal protein S19; Identified by match to protein family HMM PF00203; Belongs to the universal ribosomal protein uS19 family. | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
| NRI_0261 | rpsO | NRI_0261 | NRI_0058 | Ribosomal protein S19; Identified by match to protein family HMM PF00203; Belongs to the universal ribosomal protein uS19 family. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.999 |
| NRI_0261 | rpsP | NRI_0261 | NRI_0124 | Ribosomal protein S19; Identified by match to protein family HMM PF00203; Belongs to the universal ribosomal protein uS19 family. | Ribosomal protein S16; Identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family. | 0.999 |
| NRI_0261 | rpsR | NRI_0261 | NRI_0061 | Ribosomal protein S19; Identified by match to protein family HMM PF00203; Belongs to the universal ribosomal protein uS19 family. | Conserved domain protein; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.999 |
| efp | NRI_0261 | NRI_0189 | NRI_0261 | Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | Ribosomal protein S19; Identified by match to protein family HMM PF00203; Belongs to the universal ribosomal protein uS19 family. | 0.999 |
| efp | rplI | NRI_0189 | NRI_0060 | Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | Ribosomal protein L9; Binds to the 23S rRNA. | 0.994 |
| efp | rplT | NRI_0189 | NRI_0207 | Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.991 |
| efp | rpmG | NRI_0189 | NRI_0248 | Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | Ribosomal protein L33; Identified by match to protein family HMM PF00471; match to protein family HMM TIGR01023. | 0.997 |
| efp | rpmI | NRI_0189 | NRI_0206 | Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | Conserved domain protein; Belongs to the bacterial ribosomal protein bL35 family. | 0.993 |
| efp | rpsF | NRI_0189 | NRI_0062 | Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.994 |
| efp | rpsJ | NRI_0189 | NRI_0256 | Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
| efp | rpsO | NRI_0189 | NRI_0058 | Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.999 |
| efp | rpsP | NRI_0189 | NRI_0124 | Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | Ribosomal protein S16; Identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family. | 0.994 |
| efp | rpsR | NRI_0189 | NRI_0061 | Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | Conserved domain protein; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.991 |
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