| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| NRI_0327 | mutS | NRI_0327 | NRI_0328 | Hypothetical protein; Identified by Glimmer2; putative. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. | 0.534 |
| NRI_0651 | NRI_0709 | NRI_0651 | NRI_0709 | DNA polymerase I; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593. | Conserved hypothetical protein; Contains a frameshift based on matches to NSE_0735 (N-terminal fragment), if combined with NRI_0710 (ORF00685). | 0.897 |
| NRI_0651 | NRI_0710 | NRI_0651 | NRI_0710 | DNA polymerase I; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593. | Conserved hypothetical protein; Contains a frameshift based on matches to NSE_0735 (C-terminal fragment), if combined with NRI_0709 (ORF00684). | 0.897 |
| NRI_0651 | NRI_0731 | NRI_0651 | NRI_0731 | DNA polymerase I; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593. | Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.913 |
| NRI_0651 | dnaN | NRI_0651 | NRI_0166 | DNA polymerase I; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.995 |
| NRI_0651 | mutL | NRI_0651 | NRI_0581 | DNA polymerase I; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593. | DNA mismatch repair protein, MutL/HexB family; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.961 |
| NRI_0651 | mutS | NRI_0651 | NRI_0328 | DNA polymerase I; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. | 0.972 |
| NRI_0651 | recA | NRI_0651 | NRI_0507 | DNA polymerase I; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.978 |
| NRI_0651 | topA | NRI_0651 | NRI_0570 | DNA polymerase I; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.844 |
| NRI_0709 | NRI_0651 | NRI_0709 | NRI_0651 | Conserved hypothetical protein; Contains a frameshift based on matches to NSE_0735 (N-terminal fragment), if combined with NRI_0710 (ORF00685). | DNA polymerase I; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593. | 0.897 |
| NRI_0709 | NRI_0710 | NRI_0709 | NRI_0710 | Conserved hypothetical protein; Contains a frameshift based on matches to NSE_0735 (N-terminal fragment), if combined with NRI_0710 (ORF00685). | Conserved hypothetical protein; Contains a frameshift based on matches to NSE_0735 (C-terminal fragment), if combined with NRI_0709 (ORF00684). | 0.888 |
| NRI_0709 | dnaN | NRI_0709 | NRI_0166 | Conserved hypothetical protein; Contains a frameshift based on matches to NSE_0735 (N-terminal fragment), if combined with NRI_0710 (ORF00685). | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.904 |
| NRI_0709 | mutL | NRI_0709 | NRI_0581 | Conserved hypothetical protein; Contains a frameshift based on matches to NSE_0735 (N-terminal fragment), if combined with NRI_0710 (ORF00685). | DNA mismatch repair protein, MutL/HexB family; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.421 |
| NRI_0709 | mutS | NRI_0709 | NRI_0328 | Conserved hypothetical protein; Contains a frameshift based on matches to NSE_0735 (N-terminal fragment), if combined with NRI_0710 (ORF00685). | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. | 0.533 |
| NRI_0709 | recA | NRI_0709 | NRI_0507 | Conserved hypothetical protein; Contains a frameshift based on matches to NSE_0735 (N-terminal fragment), if combined with NRI_0710 (ORF00685). | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.741 |
| NRI_0710 | NRI_0651 | NRI_0710 | NRI_0651 | Conserved hypothetical protein; Contains a frameshift based on matches to NSE_0735 (C-terminal fragment), if combined with NRI_0709 (ORF00684). | DNA polymerase I; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593. | 0.897 |
| NRI_0710 | NRI_0709 | NRI_0710 | NRI_0709 | Conserved hypothetical protein; Contains a frameshift based on matches to NSE_0735 (C-terminal fragment), if combined with NRI_0709 (ORF00684). | Conserved hypothetical protein; Contains a frameshift based on matches to NSE_0735 (N-terminal fragment), if combined with NRI_0710 (ORF00685). | 0.888 |
| NRI_0710 | dnaN | NRI_0710 | NRI_0166 | Conserved hypothetical protein; Contains a frameshift based on matches to NSE_0735 (C-terminal fragment), if combined with NRI_0709 (ORF00684). | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.904 |
| NRI_0710 | mutL | NRI_0710 | NRI_0581 | Conserved hypothetical protein; Contains a frameshift based on matches to NSE_0735 (C-terminal fragment), if combined with NRI_0709 (ORF00684). | DNA mismatch repair protein, MutL/HexB family; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.421 |
| NRI_0710 | mutS | NRI_0710 | NRI_0328 | Conserved hypothetical protein; Contains a frameshift based on matches to NSE_0735 (C-terminal fragment), if combined with NRI_0709 (ORF00684). | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. | 0.533 |
