| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| NRI_0327 | mutS | NRI_0327 | NRI_0328 | Hypothetical protein; Identified by Glimmer2; putative. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. | 0.534 |
| NRI_0651 | NRI_0709 | NRI_0651 | NRI_0709 | DNA polymerase I; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593. | Conserved hypothetical protein; Contains a frameshift based on matches to NSE_0735 (N-terminal fragment), if combined with NRI_0710 (ORF00685). | 0.989 |
| NRI_0651 | NRI_0710 | NRI_0651 | NRI_0710 | DNA polymerase I; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593. | Conserved hypothetical protein; Contains a frameshift based on matches to NSE_0735 (C-terminal fragment), if combined with NRI_0709 (ORF00684). | 0.989 |
| NRI_0651 | dnaN | NRI_0651 | NRI_0166 | DNA polymerase I; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.999 |
| NRI_0651 | efp | NRI_0651 | NRI_0189 | DNA polymerase I; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593. | Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | 0.505 |
| NRI_0651 | mutL | NRI_0651 | NRI_0581 | DNA polymerase I; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593. | DNA mismatch repair protein, MutL/HexB family; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.990 |
| NRI_0651 | mutS | NRI_0651 | NRI_0328 | DNA polymerase I; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. | 0.997 |
| NRI_0651 | recA | NRI_0651 | NRI_0507 | DNA polymerase I; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.999 |
| NRI_0651 | topA | NRI_0651 | NRI_0570 | DNA polymerase I; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.968 |
| NRI_0709 | NRI_0651 | NRI_0709 | NRI_0651 | Conserved hypothetical protein; Contains a frameshift based on matches to NSE_0735 (N-terminal fragment), if combined with NRI_0710 (ORF00685). | DNA polymerase I; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593. | 0.989 |
| NRI_0709 | NRI_0710 | NRI_0709 | NRI_0710 | Conserved hypothetical protein; Contains a frameshift based on matches to NSE_0735 (N-terminal fragment), if combined with NRI_0710 (ORF00685). | Conserved hypothetical protein; Contains a frameshift based on matches to NSE_0735 (C-terminal fragment), if combined with NRI_0709 (ORF00684). | 0.888 |
| NRI_0709 | dnaN | NRI_0709 | NRI_0166 | Conserved hypothetical protein; Contains a frameshift based on matches to NSE_0735 (N-terminal fragment), if combined with NRI_0710 (ORF00685). | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.988 |
| NRI_0709 | mutL | NRI_0709 | NRI_0581 | Conserved hypothetical protein; Contains a frameshift based on matches to NSE_0735 (N-terminal fragment), if combined with NRI_0710 (ORF00685). | DNA mismatch repair protein, MutL/HexB family; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.436 |
| NRI_0709 | mutS | NRI_0709 | NRI_0328 | Conserved hypothetical protein; Contains a frameshift based on matches to NSE_0735 (N-terminal fragment), if combined with NRI_0710 (ORF00685). | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. | 0.512 |
| NRI_0709 | recA | NRI_0709 | NRI_0507 | Conserved hypothetical protein; Contains a frameshift based on matches to NSE_0735 (N-terminal fragment), if combined with NRI_0710 (ORF00685). | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.679 |
| NRI_0709 | topA | NRI_0709 | NRI_0570 | Conserved hypothetical protein; Contains a frameshift based on matches to NSE_0735 (N-terminal fragment), if combined with NRI_0710 (ORF00685). | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.512 |
| NRI_0710 | NRI_0651 | NRI_0710 | NRI_0651 | Conserved hypothetical protein; Contains a frameshift based on matches to NSE_0735 (C-terminal fragment), if combined with NRI_0709 (ORF00684). | DNA polymerase I; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593. | 0.989 |
| NRI_0710 | NRI_0709 | NRI_0710 | NRI_0709 | Conserved hypothetical protein; Contains a frameshift based on matches to NSE_0735 (C-terminal fragment), if combined with NRI_0709 (ORF00684). | Conserved hypothetical protein; Contains a frameshift based on matches to NSE_0735 (N-terminal fragment), if combined with NRI_0710 (ORF00685). | 0.888 |
| NRI_0710 | dnaN | NRI_0710 | NRI_0166 | Conserved hypothetical protein; Contains a frameshift based on matches to NSE_0735 (C-terminal fragment), if combined with NRI_0709 (ORF00684). | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.988 |
| NRI_0710 | mutL | NRI_0710 | NRI_0581 | Conserved hypothetical protein; Contains a frameshift based on matches to NSE_0735 (C-terminal fragment), if combined with NRI_0709 (ORF00684). | DNA mismatch repair protein, MutL/HexB family; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.436 |