STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
recODNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (238 aa)    
Predicted Functional Partners:
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
   
 
 0.910
NRI_0436
Conserved hypothetical protein; Identified by match to protein family HMM PF07031.
 
     0.847
NRI_0184
Conserved hypothetical protein; Belongs to the DnaA family.
 
   
 0.795
NRI_0435
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
NRI_0223
Identified by match to protein family HMM PF01381.
  
    0.769
NRI_0478
Conserved hypothetical protein; Identified by match to protein family HMM PF06242.
  
     0.751
NRI_0348
Conserved hypothetical protein; Identified by match to protein family HMM PF04280.
  
     0.718
NRI_0433
Deoxyguanosinetriphosphate triphosphohydrolase, putative; Identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR01353; Belongs to the dGTPase family. Type 2 subfamily.
     
 0.702
NRI_0442
ATP-dependent DNA helicase, UvrD/REP family; Identified by match to protein family HMM PF00580; Belongs to the helicase family. UvrD subfamily.
 
   
 0.696
era
GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
  
  
 0.691
Your Current Organism:
Neorickettsia risticii
NCBI taxonomy Id: 434131
Other names: N. risticii str. Illinois, Neorickettsia risticii str. Illinois, Neorickettsia risticii strain Illinois
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.