STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NRI_0500Conserved hypothetical protein. (51 aa)    
Predicted Functional Partners:
NRI_0343
DNA helicase II, UvrD/Rep family, N-terminal fragment; Contains a frameshift based on matches to NSE_0356 (helicase, UvrD/Rep family), if combined with NRI_0344 (ORF00332) Identified by match to protein family HMM PF00580.
   
   0.475
NRI_0344
DNA helicase II, UvrD/Rep family, C-terminal fragment; Contains a frameshift based on matches to NSE_0356 (helicase, UvrD/Rep family), if combined with NRI_0343 (ORF00331).
   
   0.475
NRI_0498
Putative ribosome-binding factor A.
       0.475
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
       0.471
NRI_0499
Conserved hypothetical protein.
       0.468
nusA
N utilization substance protein A; Participates in both transcription termination and antitermination.
       0.465
Your Current Organism:
Neorickettsia risticii
NCBI taxonomy Id: 434131
Other names: N. risticii str. Illinois, Neorickettsia risticii str. Illinois, Neorickettsia risticii strain Illinois
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.