NRI_0505 protein (Neorickettsia risticii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NRI_0505

Conserved hypothetical protein. (87 aa)

Predicted Functional Partners:

NRI_0504

0.826

NRI_0506

0.817

recA

0.774

pleC-2

0.490

Your Current Organism:

Neorickettsia risticii

NCBI taxonomy Id: 434131
Other names: N. risticii str. Illinois, Neorickettsia risticii str. Illinois, Neorickettsia risticii strain Illinois

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NRI_0504	NRI_0505	NRI_0504	NRI_0505	Identified by match to protein family HMM PF02470.	Conserved hypothetical protein.	0.826
NRI_0504	NRI_0506	NRI_0504	NRI_0506	Identified by match to protein family HMM PF02470.	Identified by match to protein family HMM PF01612.	0.790
NRI_0504	pleC-2	NRI_0504	NRI_0508	Identified by match to protein family HMM PF02470.	Sensor histidine kinase, PleC-like protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	0.492
NRI_0504	recA	NRI_0504	NRI_0507	Identified by match to protein family HMM PF02470.	Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.	0.775
NRI_0505	NRI_0504	NRI_0505	NRI_0504	Conserved hypothetical protein.	Identified by match to protein family HMM PF02470.	0.826
NRI_0505	NRI_0506	NRI_0505	NRI_0506	Conserved hypothetical protein.	Identified by match to protein family HMM PF01612.	0.817
NRI_0505	pleC-2	NRI_0505	NRI_0508	Conserved hypothetical protein.	Sensor histidine kinase, PleC-like protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	0.490
NRI_0505	recA	NRI_0505	NRI_0507	Conserved hypothetical protein.	Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.	0.774
NRI_0506	NRI_0504	NRI_0506	NRI_0504	Identified by match to protein family HMM PF01612.	Identified by match to protein family HMM PF02470.	0.790
NRI_0506	NRI_0505	NRI_0506	NRI_0505	Identified by match to protein family HMM PF01612.	Conserved hypothetical protein.	0.817
NRI_0506	pleC-2	NRI_0506	NRI_0508	Identified by match to protein family HMM PF01612.	Sensor histidine kinase, PleC-like protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	0.501
NRI_0506	recA	NRI_0506	NRI_0507	Identified by match to protein family HMM PF01612.	Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.	0.831
pleC-2	NRI_0504	NRI_0508	NRI_0504	Sensor histidine kinase, PleC-like protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Identified by match to protein family HMM PF02470.	0.492
pleC-2	NRI_0505	NRI_0508	NRI_0505	Sensor histidine kinase, PleC-like protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Conserved hypothetical protein.	0.490
pleC-2	NRI_0506	NRI_0508	NRI_0506	Sensor histidine kinase, PleC-like protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Identified by match to protein family HMM PF01612.	0.501
pleC-2	recA	NRI_0508	NRI_0507	Sensor histidine kinase, PleC-like protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.	0.681
recA	NRI_0504	NRI_0507	NRI_0504	Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.	Identified by match to protein family HMM PF02470.	0.775
recA	NRI_0505	NRI_0507	NRI_0505	Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.	Conserved hypothetical protein.	0.774
recA	NRI_0506	NRI_0507	NRI_0506	Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.	Identified by match to protein family HMM PF01612.	0.831
recA	pleC-2	NRI_0507	NRI_0508	Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.	Sensor histidine kinase, PleC-like protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	0.681