Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
NRI_0586Conserved hypothetical protein. (215 aa)    
Predicted Functional Partners:
bioF
8-amino-7-oxononanoate synthase; Identified by match to protein family HMM PF00155.
 
 0.983
NRI_0041
Enoyl-[acyl-carrier-protein] reductase [NADH] 1.
    
 0.904
NRI_0427
Acyl carrier protein.
 
 
 
 0.787
NRI_0022
Conserved hypothetical protein; Identified by match to protein family HMM PF00023.
 
  0.764
bioC
Biotin biosynthesis protein BioC; Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway.
 
   
 0.731
NRI_0499
Conserved hypothetical protein.
  
     0.703
NRI_0176
Conserved hypothetical protein.
  
     0.631
NRI_0897
Conserved hypothetical protein.
  
     0.614
NRI_0617
Rotamase family protein; Matched to COG0760: Parvulin-like peptidyl-prolyl isomerase; Completely overlapped with NRI_0618.
  
 
   0.591
atpH
ATP synthase F1, delta subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation; Belongs to the ATPase delta chain family.
 
 
   0.590
Your Current Organism:
Neorickettsia risticii
NCBI taxonomy Id: 434131
Other names: N. risticii str. Illinois, Neorickettsia risticii str. Illinois, Neorickettsia risticii strain Illinois
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