Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| NRI_0364 | NRI_0645 | NRI_0364 | NRI_0645 | NADH:ubiquinone oxidoreductase 18 kda subunit; Identified by match to protein family HMM PF04800. | Methyltransferase domain family; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242. | 0.423 |
| NRI_0364 | nuoG | NRI_0364 | NRI_0051 | NADH:ubiquinone oxidoreductase 18 kda subunit; Identified by match to protein family HMM PF04800. | NADH dehydrogenase (quinone), g subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. | 0.578 |
| NRI_0367 | NRI_0638 | NRI_0367 | NRI_0638 | Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993. | Oxidoreductase, FAD-binding domain protein; Identified by match to protein family HMM PF00970. | 0.617 |
| NRI_0367 | NRI_0645 | NRI_0367 | NRI_0645 | Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993. | Methyltransferase domain family; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242. | 0.421 |
| NRI_0367 | ribD | NRI_0367 | NRI_0472 | Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993. | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.511 |
| NRI_0574 | NRI_0645 | NRI_0574 | NRI_0645 | ATP synthase beta subunit/transription termination factor rho; Identified by match to protein family HMM PF02636. | Methyltransferase domain family; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242. | 0.624 |
| NRI_0574 | nuoG | NRI_0574 | NRI_0051 | ATP synthase beta subunit/transription termination factor rho; Identified by match to protein family HMM PF02636. | NADH dehydrogenase (quinone), g subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. | 0.899 |
| NRI_0638 | NRI_0367 | NRI_0638 | NRI_0367 | Oxidoreductase, FAD-binding domain protein; Identified by match to protein family HMM PF00970. | Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993. | 0.617 |
| NRI_0638 | NRI_0645 | NRI_0638 | NRI_0645 | Oxidoreductase, FAD-binding domain protein; Identified by match to protein family HMM PF00970. | Methyltransferase domain family; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242. | 0.526 |
| NRI_0645 | NRI_0364 | NRI_0645 | NRI_0364 | Methyltransferase domain family; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242. | NADH:ubiquinone oxidoreductase 18 kda subunit; Identified by match to protein family HMM PF04800. | 0.423 |
| NRI_0645 | NRI_0367 | NRI_0645 | NRI_0367 | Methyltransferase domain family; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242. | Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993. | 0.421 |
| NRI_0645 | NRI_0574 | NRI_0645 | NRI_0574 | Methyltransferase domain family; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242. | ATP synthase beta subunit/transription termination factor rho; Identified by match to protein family HMM PF02636. | 0.624 |
| NRI_0645 | NRI_0638 | NRI_0645 | NRI_0638 | Methyltransferase domain family; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242. | Oxidoreductase, FAD-binding domain protein; Identified by match to protein family HMM PF00970. | 0.526 |
| NRI_0645 | NRI_0647 | NRI_0645 | NRI_0647 | Methyltransferase domain family; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242. | Hypothetical protein; Identified by Glimmer2; putative. | 0.510 |
| NRI_0645 | greA | NRI_0645 | NRI_0646 | Methyltransferase domain family; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242. | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | 0.783 |
| NRI_0645 | nuoG | NRI_0645 | NRI_0051 | Methyltransferase domain family; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242. | NADH dehydrogenase (quinone), g subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. | 0.487 |
| NRI_0645 | ribD | NRI_0645 | NRI_0472 | Methyltransferase domain family; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242. | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.519 |
| NRI_0647 | NRI_0645 | NRI_0647 | NRI_0645 | Hypothetical protein; Identified by Glimmer2; putative. | Methyltransferase domain family; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242. | 0.510 |
| NRI_0647 | greA | NRI_0647 | NRI_0646 | Hypothetical protein; Identified by Glimmer2; putative. | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | 0.510 |
| greA | NRI_0645 | NRI_0646 | NRI_0645 | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | Methyltransferase domain family; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242. | 0.783 |
page 1 of 2