STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NRI_0676ABC transporter permease protein; Identified by match to protein family HMM PF02405. (250 aa)    
Predicted Functional Partners:
NRI_0677
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.999
NRI_0504
Identified by match to protein family HMM PF02470.
 
 0.996
NRI_0897
Conserved hypothetical protein.
  
 
 0.897
NRI_0678
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
       0.777
NRI_0896
Putative VacJ lipoprotein; Identified by match to protein family HMM PF04333.
 
   
 0.736
yaeT
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
     0.629
NRI_0675
Hypothetical protein; Identified by Glimmer2; putative.
       0.571
glnA
Glutamine synthetase, catalytic domain protein; Identified by match to protein family HMM PF00120; Belongs to the glutamine synthetase family.
       0.515
Your Current Organism:
Neorickettsia risticii
NCBI taxonomy Id: 434131
Other names: N. risticii str. Illinois, Neorickettsia risticii str. Illinois, Neorickettsia risticii strain Illinois
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