STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NRI_0678ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (305 aa)    
Predicted Functional Partners:
NRI_0482
Heme exporter protein, CcmC family; Identified by match to protein family HMM PF01578; match to protein family HMM TIGR01191.
 
 0.998
ccmE
cytoChrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.
 
 
 0.819
NRI_0157
CcmB-related protein.
     
  0.800
NRI_0676
ABC transporter permease protein; Identified by match to protein family HMM PF02405.
       0.782
NRI_0677
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
       0.782
NRI_0549
Cytochrome c-type biogenesis protein, CcmF/CycK/CcsA family; Identified by match to protein family HMM PF01578.
 
   
 0.601
NRI_0675
Hypothetical protein; Identified by Glimmer2; putative.
       0.571
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
  
   
 0.568
NRI_0384
CBS domain protein; Identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471.
  
   
 0.566
NRI_0313
Preprotein translocase, YajC subunit.
     
 0.552
Your Current Organism:
Neorickettsia risticii
NCBI taxonomy Id: 434131
Other names: N. risticii str. Illinois, Neorickettsia risticii str. Illinois, Neorickettsia risticii strain Illinois
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