STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NRI_0700Putative sodium:proline symporter; Identified by match to protein family HMM PF00474; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (468 aa)    
Predicted Functional Partners:
NRI_0150
Identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835.
  
  
 0.826
NRI_0701
Pentapeptide repeat domain protein; Identified by match to protein family HMM PF00805.
       0.688
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
  
  
 0.629
NRI_0192
Putative transporter; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
 
  
 0.593
NRI_0853
Glutathione-regulated potassium-efflux system protein; Identified by match to protein family HMM PF00999; match to protein family HMM PF02254; match to protein family HMM TIGR00932; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
     
 0.567
NRI_0705
Citrate synthase; Identified by match to protein family HMM PF00285; Belongs to the citrate synthase family.
   
  
 0.536
cckA
Sensor histidine kinase/response regulator CckA; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.
     
 0.521
NRI_0699
Bacterioferritin comigratory protein; Identified by match to protein family HMM PF00578; match to protein family HMM PF08534.
  
    0.505
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
     
 0.499
NRI_0154
Putative transporter; Identified by match to protein family HMM PF03600.
 
  
 0.457
Your Current Organism:
Neorickettsia risticii
NCBI taxonomy Id: 434131
Other names: N. risticii str. Illinois, Neorickettsia risticii str. Illinois, Neorickettsia risticii strain Illinois
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