STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
NRI_0713Type IV secretion system protein VirD4; Identified by match to protein family HMM PF02534. (641 aa)    
Predicted Functional Partners:
NRI_0715
Type IV secretion system protein VirB10; Identified by match to protein family HMM PF03743.
 
 
 
 0.956
NRI_0718
Type IV secretion system protein VirB8; Identified by match to protein family HMM PF04335.
 
   
 0.939
virB9
Type IV secretion system protein VirB9; Identified by match to protein family HMM PF03524; match to protein family HMM TIGR02781.
 
   
 0.910
NRI_0831
Type IV secretion system protein VirB4; Identified by match to protein family HMM PF03135; match to protein family HMM TIGR00929.
 
  
 0.902
virB
P-type DNA transfer ATPase VirB11; Part of the Type IV secretion system. Belongs to the GSP E family.
 
   
 0.880
NRI_0832
Type IV secretion system protein VirB3; Identified by match to protein family HMM PF05101.
 
   
 0.871
NRI_0202
Type IV secretion system protein VirB9; Identified by match to protein family HMM PF03524.
 
   
 0.821
NRI_0737
Type IV secretion system protein VirB4.
 
  
 0.719
NRI_0830
Type IV secretion system protein VirB6; Identified by match to protein family HMM PF04610.
 
   
 0.663
NRI_0834
Phospholipase, patatin family; Identified by match to protein family HMM PF01734.
    
   0.574
Your Current Organism:
Neorickettsia risticii
NCBI taxonomy Id: 434131
Other names: N. risticii str. Illinois, Neorickettsia risticii str. Illinois, Neorickettsia risticii strain Illinois
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.