NRI_0773 protein (Neorickettsia risticii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NRI_0773

Identified by match to protein family HMM PF01613. (152 aa)

Predicted Functional Partners:

ubiA

0.825

NRI_0771

0.773

NRI_0774

0.631

NRI_0770

0.561

ribD

0.418

Your Current Organism:

Neorickettsia risticii

NCBI taxonomy Id: 434131
Other names: N. risticii str. Illinois, Neorickettsia risticii str. Illinois, Neorickettsia risticii strain Illinois

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NRI_0770	NRI_0771	NRI_0770	NRI_0771	Conserved hypothetical protein.	Hypothetical protein; Identified by Glimmer2; putative.	0.561
NRI_0770	NRI_0773	NRI_0770	NRI_0773	Conserved hypothetical protein.	Identified by match to protein family HMM PF01613.	0.561
NRI_0770	ubiA	NRI_0770	NRI_0772	Conserved hypothetical protein.	4-hydroxybenzoate octaprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.	0.561
NRI_0771	NRI_0770	NRI_0771	NRI_0770	Hypothetical protein; Identified by Glimmer2; putative.	Conserved hypothetical protein.	0.561
NRI_0771	NRI_0773	NRI_0771	NRI_0773	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM PF01613.	0.773
NRI_0771	NRI_0774	NRI_0771	NRI_0774	Hypothetical protein; Identified by Glimmer2; putative.	Phosphate import ATP-binding protein PstB; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	0.523
NRI_0771	ubiA	NRI_0771	NRI_0772	Hypothetical protein; Identified by Glimmer2; putative.	4-hydroxybenzoate octaprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.	0.773
NRI_0773	NRI_0770	NRI_0773	NRI_0770	Identified by match to protein family HMM PF01613.	Conserved hypothetical protein.	0.561
NRI_0773	NRI_0771	NRI_0773	NRI_0771	Identified by match to protein family HMM PF01613.	Hypothetical protein; Identified by Glimmer2; putative.	0.773
NRI_0773	NRI_0774	NRI_0773	NRI_0774	Identified by match to protein family HMM PF01613.	Phosphate import ATP-binding protein PstB; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	0.631
NRI_0773	ribD	NRI_0773	NRI_0472	Identified by match to protein family HMM PF01613.	Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.	0.418
NRI_0773	ubiA	NRI_0773	NRI_0772	Identified by match to protein family HMM PF01613.	4-hydroxybenzoate octaprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.	0.825
NRI_0774	NRI_0771	NRI_0774	NRI_0771	Phosphate import ATP-binding protein PstB; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	Hypothetical protein; Identified by Glimmer2; putative.	0.523
NRI_0774	NRI_0773	NRI_0774	NRI_0773	Phosphate import ATP-binding protein PstB; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	Identified by match to protein family HMM PF01613.	0.631
NRI_0774	ubiA	NRI_0774	NRI_0772	Phosphate import ATP-binding protein PstB; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	4-hydroxybenzoate octaprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.	0.630
ribD	NRI_0773	NRI_0472	NRI_0773	Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.	Identified by match to protein family HMM PF01613.	0.418
ribD	ubiA	NRI_0472	NRI_0772	Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.	4-hydroxybenzoate octaprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.	0.638
ubiA	NRI_0770	NRI_0772	NRI_0770	4-hydroxybenzoate octaprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.	Conserved hypothetical protein.	0.561
ubiA	NRI_0771	NRI_0772	NRI_0771	4-hydroxybenzoate octaprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.	Hypothetical protein; Identified by Glimmer2; putative.	0.773
ubiA	NRI_0773	NRI_0772	NRI_0773	4-hydroxybenzoate octaprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.	Identified by match to protein family HMM PF01613.	0.825