Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| NRI_0482 | NRI_0549 | NRI_0482 | NRI_0549 | Heme exporter protein, CcmC family; Identified by match to protein family HMM PF01578; match to protein family HMM TIGR01191. | Cytochrome c-type biogenesis protein, CcmF/CycK/CcsA family; Identified by match to protein family HMM PF01578. | 0.895 |
| NRI_0482 | NRI_0678 | NRI_0482 | NRI_0678 | Heme exporter protein, CcmC family; Identified by match to protein family HMM PF01578; match to protein family HMM TIGR01191. | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | 0.998 |
| NRI_0482 | ccmE | NRI_0482 | NRI_0799 | Heme exporter protein, CcmC family; Identified by match to protein family HMM PF01578; match to protein family HMM TIGR01191. | cytoChrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family. | 0.998 |
| NRI_0482 | coxW | NRI_0482 | NRI_0824 | Heme exporter protein, CcmC family; Identified by match to protein family HMM PF01578; match to protein family HMM TIGR01191. | Cytochrome c oxidase assembly protein; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily. | 0.489 |
| NRI_0549 | NRI_0482 | NRI_0549 | NRI_0482 | Cytochrome c-type biogenesis protein, CcmF/CycK/CcsA family; Identified by match to protein family HMM PF01578. | Heme exporter protein, CcmC family; Identified by match to protein family HMM PF01578; match to protein family HMM TIGR01191. | 0.895 |
| NRI_0549 | NRI_0678 | NRI_0549 | NRI_0678 | Cytochrome c-type biogenesis protein, CcmF/CycK/CcsA family; Identified by match to protein family HMM PF01578. | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | 0.601 |
| NRI_0549 | ccmE | NRI_0549 | NRI_0799 | Cytochrome c-type biogenesis protein, CcmF/CycK/CcsA family; Identified by match to protein family HMM PF01578. | cytoChrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family. | 0.938 |
| NRI_0549 | ribD | NRI_0549 | NRI_0472 | Cytochrome c-type biogenesis protein, CcmF/CycK/CcsA family; Identified by match to protein family HMM PF01578. | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.467 |
| NRI_0678 | NRI_0482 | NRI_0678 | NRI_0482 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | Heme exporter protein, CcmC family; Identified by match to protein family HMM PF01578; match to protein family HMM TIGR01191. | 0.998 |
| NRI_0678 | NRI_0549 | NRI_0678 | NRI_0549 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | Cytochrome c-type biogenesis protein, CcmF/CycK/CcsA family; Identified by match to protein family HMM PF01578. | 0.601 |
| NRI_0678 | ccmE | NRI_0678 | NRI_0799 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | cytoChrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family. | 0.819 |
| NRI_0800 | ccmE | NRI_0800 | NRI_0799 | Metallo-beta-lactamase family, beta-casp subfamily; Identified by match to protein family HMM PF00753; match to protein family HMM PF07521. | cytoChrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family. | 0.782 |
| NRI_0800 | rpsU | NRI_0800 | NRI_0798 | Metallo-beta-lactamase family, beta-casp subfamily; Identified by match to protein family HMM PF00753; match to protein family HMM PF07521. | Ribosomal protein S21; Identified by match to protein family HMM TIGR00030; Belongs to the bacterial ribosomal protein bS21 family. | 0.566 |
| ccmE | NRI_0482 | NRI_0799 | NRI_0482 | cytoChrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family. | Heme exporter protein, CcmC family; Identified by match to protein family HMM PF01578; match to protein family HMM TIGR01191. | 0.998 |
| ccmE | NRI_0549 | NRI_0799 | NRI_0549 | cytoChrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family. | Cytochrome c-type biogenesis protein, CcmF/CycK/CcsA family; Identified by match to protein family HMM PF01578. | 0.938 |
| ccmE | NRI_0678 | NRI_0799 | NRI_0678 | cytoChrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family. | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | 0.819 |
| ccmE | NRI_0800 | NRI_0799 | NRI_0800 | cytoChrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family. | Metallo-beta-lactamase family, beta-casp subfamily; Identified by match to protein family HMM PF00753; match to protein family HMM PF07521. | 0.782 |
| ccmE | coxW | NRI_0799 | NRI_0824 | cytoChrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family. | Cytochrome c oxidase assembly protein; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily. | 0.481 |
| ccmE | hemH | NRI_0799 | NRI_0756 | cytoChrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family. | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.461 |
| ccmE | ribD | NRI_0799 | NRI_0472 | cytoChrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family. | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.482 |
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