NRI_0867 protein (Neorickettsia risticii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NRI_0867

Conserved hypothetical protein. (229 aa)

Predicted Functional Partners:

NRI_0332

0.664

recR

0.648

NRI_0651

0.605

NRI_0868

0.583

trmD

0.505

NRI_0184

0.485

NRI_0617

0.478

rplU

0.472

recO

0.461

groL

0.420

Your Current Organism:

Neorickettsia risticii

NCBI taxonomy Id: 434131
Other names: N. risticii str. Illinois, Neorickettsia risticii str. Illinois, Neorickettsia risticii strain Illinois

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NRI_0184	NRI_0617	NRI_0184	NRI_0617	Conserved hypothetical protein; Belongs to the DnaA family.	Rotamase family protein; Matched to COG0760: Parvulin-like peptidyl-prolyl isomerase; Completely overlapped with NRI_0618.	0.408
NRI_0184	NRI_0651	NRI_0184	NRI_0651	Conserved hypothetical protein; Belongs to the DnaA family.	DNA polymerase I; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593.	0.533
NRI_0184	NRI_0867	NRI_0184	NRI_0867	Conserved hypothetical protein; Belongs to the DnaA family.	Conserved hypothetical protein.	0.485
NRI_0184	recO	NRI_0184	NRI_0434	Conserved hypothetical protein; Belongs to the DnaA family.	DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.	0.793
NRI_0332	NRI_0651	NRI_0332	NRI_0651	Disulfide bond formation protein, DsbB family.	DNA polymerase I; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593.	0.506
NRI_0332	NRI_0867	NRI_0332	NRI_0867	Disulfide bond formation protein, DsbB family.	Conserved hypothetical protein.	0.664
NRI_0332	NRI_0868	NRI_0332	NRI_0868	Disulfide bond formation protein, DsbB family.	Disulfide oxidoreductase; Identified by match to protein family HMM PF01323.	0.655
NRI_0617	NRI_0184	NRI_0617	NRI_0184	Rotamase family protein; Matched to COG0760: Parvulin-like peptidyl-prolyl isomerase; Completely overlapped with NRI_0618.	Conserved hypothetical protein; Belongs to the DnaA family.	0.408
NRI_0617	NRI_0651	NRI_0617	NRI_0651	Rotamase family protein; Matched to COG0760: Parvulin-like peptidyl-prolyl isomerase; Completely overlapped with NRI_0618.	DNA polymerase I; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593.	0.419
NRI_0617	NRI_0867	NRI_0617	NRI_0867	Rotamase family protein; Matched to COG0760: Parvulin-like peptidyl-prolyl isomerase; Completely overlapped with NRI_0618.	Conserved hypothetical protein.	0.478
NRI_0617	NRI_0868	NRI_0617	NRI_0868	Rotamase family protein; Matched to COG0760: Parvulin-like peptidyl-prolyl isomerase; Completely overlapped with NRI_0618.	Disulfide oxidoreductase; Identified by match to protein family HMM PF01323.	0.602
NRI_0617	groL	NRI_0617	NRI_0614	Rotamase family protein; Matched to COG0760: Parvulin-like peptidyl-prolyl isomerase; Completely overlapped with NRI_0618.	Chaperonin GroL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.	0.662
NRI_0651	NRI_0184	NRI_0651	NRI_0184	DNA polymerase I; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593.	Conserved hypothetical protein; Belongs to the DnaA family.	0.533
NRI_0651	NRI_0332	NRI_0651	NRI_0332	DNA polymerase I; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593.	Disulfide bond formation protein, DsbB family.	0.506
NRI_0651	NRI_0617	NRI_0651	NRI_0617	DNA polymerase I; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593.	Rotamase family protein; Matched to COG0760: Parvulin-like peptidyl-prolyl isomerase; Completely overlapped with NRI_0618.	0.419
NRI_0651	NRI_0867	NRI_0651	NRI_0867	DNA polymerase I; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593.	Conserved hypothetical protein.	0.605
NRI_0651	NRI_0868	NRI_0651	NRI_0868	DNA polymerase I; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593.	Disulfide oxidoreductase; Identified by match to protein family HMM PF01323.	0.605
NRI_0651	groL	NRI_0651	NRI_0614	DNA polymerase I; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593.	Chaperonin GroL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.	0.686
NRI_0651	recO	NRI_0651	NRI_0434	DNA polymerase I; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593.	DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.	0.668
NRI_0651	recR	NRI_0651	NRI_0866	DNA polymerase I; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593.	Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.	0.513